fgvieira

ngsLD

Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework

ngsF

Estimation of per-individual inbreeding coefficients under a probabilistic framework

ngsF-HMM

Estimation of per-individual inbreeding tracts under a probabilistic framework

badirate

Estimating gene family turnover rates by likelihood-based methods

ngsDist

Estimation of pairwise distances under a probabilistic framework

ngsAdmix

Non-official fork of the ngsAdmix program

popgen_course

PopGen course

snakemake_ba

Snakemake Benchmark Analysis

bioconda-recipes

Conda recipes for the bioconda channel.

prune_graph

Fast prunning of graphs based on node weights

gatk

Official code repository for GATK versions 4 and up

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

NGSNGS

NGSNGS: Next generation simulator for next generation sequencing data

panoptes

Monitor computational workflows in real time

pbs-torque

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster

snakemake-wrapper-utils

Utility functions and classes shared between Snakemake wrappers

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

superset

Apache Superset is a Data Visualization and Data Exploration Platform