fgh95

DrugLinker

Simple exact-matching algorithm to standardise drug names appearing on the DrugBank open-access repository

PKRelations

BERT-Relation-Extraction

PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper

cgm-remote-monitor

nightscout web monitor

ggj2019

meshrdf

Code and documentation for the release of MeSH in RDF format

MIMIC_Extract

MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III

nervaluate

Full named-entity (i.e., not tag/token) evaluation metrics based on SemEval’13

non_overlapping_objects_3d

Script written using Mathematica for random placement of non-overlapping 3d objects in a finite space

optuna

A hyperparameter optimization framework

topic-example

pktensors

Pubmed-Pipeline

A library that facilitates the process of building a machine learning pipeline using PubMed as a data source

pubmed_parser

:clipboard: Python XML parser for PubMed Open Access subset and MEDLINE dataset

PyperGrabber

Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.

react-native-app-clip-example

Minimal Appclip made with React Native

recurrent-neural-networks

Learning about and doing projects with recurrent neural networks

scispacy

A full spaCy pipeline and models for scientific/biomedical documents.

sepsis3-mimic

Evaluation of the Sepsis-3 guidelines in MIMIC-III

shields

Concise, consistent, and legible badges in SVG and raster format

shiny-server

My personal Shiny server

spark

Apache Spark

specter

SPECTER: Document-level Representation Learning using Citation-informed Transformers

TableDisentangler

Functional and structural analysis of tables in research papers (Table disentangling)

the-turing-way

Host repository for The Turing Way: a how to guide for reproducible data science

tidypmc

Parse full text XML documents from Pubmed Central

transformers

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.

twitter_tensors