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wtsi-hpag

Francesca Giordano's starred repositories

COVID-19

COVID-19 Italia - Monitoraggio situazione

NOASSERTION387400

minio

The Object Store for AI Data Infrastructure

Language:GoAGPL-3.04587200

MiningResume

Text Mining certain fields from a resume

Language:Jupyter NotebookMIT5600

osmnx

OSMnx is a Python package to easily download, model, analyze, and visualize street networks and other geospatial features from OpenStreetMap.

Language:PythonMIT477400

osmnx-examples

Gallery of OSMnx tutorials, usage examples, and feature demonstations.

Language:Jupyter NotebookMIT151900

simulatesv

Simulate structural variations and SNPs for artificial DNA templates.

Language:PythonMIT100

3d-dna

3D de novo assembly (3D DNA) pipeline

Language:ShellMIT19900

MECAT

MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads

Language:C++10600

crumble

Exploration of controlled loss of quality values for compressing CRAM files

Language:CNOASSERTION3400

python3_with_pleasure

A short guide on features of Python 3 with examples

Flye

De novo assembler for single molecule sequencing reads using repeat graphs

Language:CNOASSERTION75200

haven

Haven is for people who need a way to protect their personal spaces and possessions without compromising their own privacy, through an Android app and on-device sensors

Language:JavaGPL-3.0658300

quast

Genome assembly evaluation tool

Language:AMPLNOASSERTION38300

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Language:PythonBSD-3-Clause313800

MARVEL

The MARVEL assembler

Language:CNOASSERTION7600

books

Awesome Books

smartdenovo

Ultra-fast de novo assembler using long noisy reads

Language:CGPL-3.012700

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Language:CNOASSERTION174100

LRSDAY

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

Language:PerlMIT3100

circlize

Circular visualization in R

Language:RNOASSERTION95400

NA12878

Data and analysis for NA12878 genome on nanopore

Language:PythonNOASSERTION37200