fergsc

ONT-Basecaller-training

Scripts for training a basecaller model with bonito

Polymorphic-interspecies-SVs

33-Eucs

Scripts for all Eucalyptus paper

Synteny-and-rearrangement-of-3-Eucalyptus

Alignment and analysis scripts for "Long-read genome assemblies uncover extensive loss of micro-syntenty and conservation of macro-synteny among three woodland Eucalyptus species."

2019_EMBL-ABR_Snakemake_webinar

Scripts and Snakemake pipeline used in the EMBL-ABR webinar

assembly-pipeline

Blast-results-for-E.-melliodora-SV-contigs

canu-2.0

A single molecule sequence assembler for genomes large and small.

canu_1.8

cvfCompare

Compares two vcfs and determines the accuracy %.

DartToVCF

Convert dart formatted variant data to vcf formatted.

OpenMP-C

Workshop material for OpenMP-C at NCI

Parsing-RepeatMasker-Outputs

Few scripts facilitating the extraction of info from Repeat Masker .out files

RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

TALON

Technology agnostic long read analysis pipeline for transcriptomes

vcfRemoveVariants

Randomly remove x% or variants from 1 to all samples in a vcf.