Scott Ferguson's repositories
ONT-Basecaller-training
Scripts for training a basecaller model with bonito
Synteny-and-rearrangement-of-3-Eucalyptus
Alignment and analysis scripts for "Long-read genome assemblies uncover extensive loss of micro-syntenty and conservation of macro-synteny among three woodland Eucalyptus species."
2019_EMBL-ABR_Snakemake_webinar
Scripts and Snakemake pipeline used in the EMBL-ABR webinar
cvfCompare
Compares two vcfs and determines the accuracy %.
DartToVCF
Convert dart formatted variant data to vcf formatted.
OpenMP-C
Workshop material for OpenMP-C at NCI
Parsing-RepeatMasker-Outputs
Few scripts facilitating the extraction of info from Repeat Masker .out files
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
TALON
Technology agnostic long read analysis pipeline for transcriptomes
vcfRemoveVariants
Randomly remove x% or variants from 1 to all samples in a vcf.