fengyq's repositories
awesome-cheatsheets
超级速查表 - 编程语言、框架和开发工具的速查表，单个文件包含一切你需要知道的东西 :zap:
alfred
BAM Statistics, Feature Counting and Annotation
analysis_pipeline
TOPMed analysis pipeline
bioawk
BWK awk modified for biological data
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
broman
R/broman: A package with Karl Broman's personal R code
cheatsheets-1
RStudio Cheat Sheets
coolpuppy
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
debrowser
Differential Count Data Analysis Toolbox
deepTools
Tools to process and analyze deep sequencing data.
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
enveomics
Scripts and reference libraries at Kostas lab.
GENOVA
GENome Organisation Visual Analytics
ggpubr
'ggplot2' Based Publication Ready Plots
HapCUT2
software tools for haplotype assembly from sequence data
HiC_tools
A collection of tools for Hi-C data analysis
learn-python3
Learn Python 3 Sample Code
Machine-Learning-Specialization-Coursera
Contains Solutions and Notes for the Machine Learning Specialization By Stanford University and Deeplearning.ai - Coursera (2022) by Prof. Andrew NG
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
public_scripts
collection of bioinformatic scripts
Python
My Python Examples
sample-sheet
A permissively licensed library designed to replace Illumina's Experiment Manager
scRNA.seq.course
Analysis of single cell RNA-seq data course
snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
tinyatlas
A tiny cell atlas for commonly sequenced organisms.
workshop-reproducible-research
NBIS course: Tools for Reproducible Research