fconstancias

metabaRpipe

an R package to process raw metabarcoding data into a phyloseq object using a single command

amchick

NRP72-FBT

DivComAnalyses

Community Analysis and visualisation using R

omnibus-and-maaslin2-rscripts-and-hmp2-data

Omnibus and Maaslin2 Rscripts and hmp2-data

bac-genomics-scripts

Collection of scripts for bacterial genomics

BIO-ML

Command lines for the BIO-ML resources

biotyper

an R package to biotype a community

CMMG

Comprehensive mouse gut metagenome collection

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

dada2_guidelines

A repository with a general dada2 pipeline for amplicon processing

evolution

example-1

gitlab_training

metabarcoding

metabarcodingRpipeline

metabaRpipe-source

metagMisc

Miscellaneous functions for metagenomic analysis.

metaphlanR

R functions to process MetaPhlAn / HUMAnN metagenomic profilers

mock

oral-microbiome

syncomR

R package with wrapped functions for synthetic microbial community analysis.

trainings

The South Green platform has conducted a series of training courses for several years and this github repository gives access to all trainings.