fcampelo

EC-Bestiary

A bestiary of evolutionary, swarm and other metaphor-based algorithms

Design-and-Analysis-of-Experiments

Lecture Notes on Design & Analysis of Experiments

MOEADr

R package MOEADr, a modular implementation of the Multiobjective Evolutionary Algorithm with Decomposition (MOEA/D) framework

epitopes

Processing and Feature Extraction for Epitope Data

CAISEr

CAISEr - Comparison of algorithms with Iterative Sample size Estimation in R

CALANGO

CALANGO: Comparative AnaLysis with ANnotation terms for GenOmics

Loudspeaker-model

FEMM loudspeaker model

EEG_Classification_

moead-codes

Collection of MOEA/D source codes (with references)

OrgSpec-paper

Full reproducibility scripts and data for paper "Organism Specific Data Sets Improve Linear B-Cell Epitope Prediction Performance"

orgspec_LBCE_limits

source code for paper "Estimating the limits for organism-specific epitope prediction"

Calanguize_genomes

COVID-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

covid19br.github.io

EpiDope

Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

heatmaply

Interactive Heat Maps for R Using plotly

irace

JHEUR2020-reproducibility-scripts

Reproducibility scripts for "Sample size calculations for the experimental comparison of multiple algorithms on multiple problem instances", 2020.

KOMODO2-July2020

Annotation-based, phylogeny-aware comparative genomics tool

moses

Multi-Objective SEquence Splitter for data with group dependencies

Multi-objective-Epitope-Prediction-for-Diagnostic-Test-Development

pbapply

Adding progress bar to '*apply' functions in R

pepfeature

Pfeature

Computation of features of peptides and proteins

protein_bert

protr

Comprehensive toolkit for generating various numerical features of protein sequences

Python-LinearB-Cell-Epitope-Data-Extraction

rdrop2

Dropbox Interface from R

TaxonSampling

R Package TaxonSampling