farchaab's repositories
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Language:NextflowMIT000
benchmark-MeSS-CAMISIM
Nextflow pipeline to benchmark two shotgun metagenomic communities simulators
Language:PythonGPL-3.0000
bioconda-recipes
Conda recipes for the bioconda channel.
Language:ShellMIT000
diag_pipelines
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
Language:Python000
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:PythonGPL-3.0000
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:PythonBSD-3-Clause000