farchaab

farchaab

Geek Repo

Company:CHUV Institute of Microbiology

Location:Lausanne

Home Page:https://www.chuv.ch/en/microbiologie/imu-home/diagnostics/genomics-and-metagenomics

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farchaab's repositories

ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

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benchmark-MeSS-CAMISIM

Nextflow pipeline to benchmark two shotgun metagenomic communities simulators

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bioconda-recipes

Conda recipes for the bioconda channel.

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diag_pipelines

Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

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staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

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