fanzheng10

Fan Zheng's repositories

CliXO algorithm re-implemented

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HiDeF (Hierarchical community Decoding Framework)

Language:Jupyter NotebookBSD-3-Clause13 2 2

Enrichment analysis for nested and overlapping gene sets

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HiDeF (Hierarchical community Decoding Framework)

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Fan's code in Grigoryan lab

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Toolkit for constructing, analyzing, and visualizing data-driven ontologies

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R package to infer biological activities from omics data using a collection of methods.

Language:RGPL-3.0000

Code to reproduce the results from decoupleR's manuscript

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Package to benchmark methods from decoupleR

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method for computing stability changes in proteins upon mutations, published in https://doi.org/10.1371/journal.pone.0178272

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Listing of papers about machine learning for proteins.

GPL-3.0000

Analysis of mutations in new cohorts after TCGA, such as ICGC, CPTAC and GENIE, using the tools developed in the NeST paper

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A transcriptome browser for Ribo-Seq and RNA-Seq data

Language:PythonMIT000