fanying2015's repositories
atac-seq-pipeline
ENCODE ATAC-seq pipeline
Hackathon_2020
2020 IBM coronavirus challenge at Cornell
BayesPrism
A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
biotools
A list of useful bioinformatics resources
cbioportal
cBioPortal for Cancer Genomics
ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
deeplearning-biology
A list of deep learning implementations in biology
exe
example of collaboration in git
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics
GSSG
Gene Set + S2G strategy annotations analyzed for disease architecture
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
main
Summary of training offered by the Harvard Chan Bioinformatics Core
NGI-RNAseq
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
pyDNase
Python module for the easy handling and analysis of DNase-seq data
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
python_advanced
preparation for Dec 2015 advanced python workshop
reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
repo_test3
for workshop_3_collaborating
RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
unit-testing-seminar
Unit Testing for Reproducible Science seminar at Sloan Kettering