Biophysics Group at the University of Erlangen-Nuremberg's repositories
clickpoints
Click Points is a program written in the Python programming language, which serves on the one hand as an image viewer and on the other hand as an data display and annotation tool. Every frame can be annotated by a description, marked points/tracks, or marked areas (paint brush). This helps to view image data, do manual evaluation of data, help to create semi-automatic evaluation or display the results of automatic image evaluation.
3D_piv_example_data
A simple data set for 3D Particel Image Veolcimetry
Deformation_Cytometer
a low cost easy to use deformation cytometer
fiber-orientation
Evaluates fiber orientation
spheroid_invasion_assay
Invasiveness of 3D spheroids using the radial cell density profile.
clickpointsexamples
Some example datasets for ClickPoints
localAlignement
A clickpoints addon to analyze the alignement of vector fields close to manually drawn lines
pengu_track
Master thesis Alexander Winterl, tracking algorithms for penguins and cells.
SegmenationEvaluation
clickpoints addon to compare two segmentation algorithms
Bioprinter
scripts to use the bioprinter
Classic-Invasion-Assay
Analysis of cingle cell invasion depth of cells beeing seeded of top of a (collagen-)gel. Cells need to be imaged with BF and Fluo (Hoechst).
example_data_for_pyTFM
example data for pyTFM
tracking_andreas
collection of tracking scripts by Andreas