fabilab

fabilab

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Location:Australia

Home Page:https://fabilab.org

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fabilab's repositories

northstar

Single cell type annotation guided by cell atlases, with freedom to be queer

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cell_atlas_approximations

This is an umbrella repo describing cell atlas approximations

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northstar_analysis

Jupyter notebooks and scripts to perform atlas-based scRNA-seq analysis using Northstar

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apica

API for compressed cell atlases

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atlas_landmarks

Single cell gene expression data, averaged or subsampled by cell type

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cell_atlas_approximations_API

APIs for cell atlas approximations

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cell_atlas_approximations_compression

Compression for cell atlas approximations

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cell_atlas_approximations_HI

Human interface for cell atlas approximations

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cell_atlas_approximations_NLP

Natural language processor for cell atlas approximations

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treasuremap

Treasuremap is a variation of UMAP that embeds a network with some fixed nodes.

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scquill

Approximate any single cell data set, saving >99% of memory and runtime.

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