fabilab

northstar

Single cell type annotation guided by cell atlases, with freedom to be queer

cell_atlas_approximations

This is an umbrella repo describing cell atlas approximations

northstar_analysis

Jupyter notebooks and scripts to perform atlas-based scRNA-seq analysis using Northstar

apica

API for compressed cell atlases

atlas_landmarks

Single cell gene expression data, averaged or subsampled by cell type

cell_atlas_approximations_API

APIs for cell atlas approximations

cell_atlas_approximations_compression

Compression for cell atlas approximations

cell_atlas_approximations_HI

Human interface for cell atlas approximations

cell_atlas_approximations_NLP

Natural language processor for cell atlas approximations

data-compression-and-APIs-for-cell-atlases

igraph_docs_Adrian

treasuremap

Treasuremap is a variation of UMAP that embeds a network with some fixed nodes.

scquill

Approximate any single cell data set, saving >99% of memory and runtime.