evolgenomics's repositories
haplotagging
Code and binaries related to processing haplotagging data
HeliconiusHaplotagging
Code related to Meier, Salazar, Kucka et al.
Archive
Archival code from previous projects
cactus
Official home of genome aligner based upon notion of Cactus graphs
FaroeQTL
QTL mapping experiment between the Faroese mouse from Mykines island (MYK) and SM/J
HybridMiX
Code associated with our HybridMiX paper
Longshanks
Data and analyses related to Castro et al., 2019, doi: 10.1101/378711
physlr
:chains: Construct a Physical Map from Linked Reads
popHap_simulations
Run simulations for population haplotyping
SamHaplotag
Process haplotag barcodes in SAM format
scaffhtag
Pipeline for scaffolding genome assemblies using haplotagging reads
shrinkwrapping
Amira Tcl and other utility scripts for segmenting objects and generating surfaces
supernova
10x Genomics Linked-Read Diploid De Novo Assembler