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evocellnet

evocellnet

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evocellnet's repositories

funscoR

R package for functionally scoring phosphorylation sites

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ptm_hotspots

Estimate PTM hotspots in protein sequence alignments

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ksea

Kinase Activity Predictions from shotgun proteomics

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int3dInterfaces

Pipeline to extract protein interfaces from Interactome3d structures

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bc_deep_learning_in_biology

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kpred

Uncovering phosphorylation–based specificities through functional interaction networks

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ptmAge

Calculates the age of a PTM using ancestral reconstruction (from Romain Studer)

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phosfate

Phosfate - Understanding human quantitative phosphoproteomics

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ptmdb

This projects contains all the necessary code to create and fill the ptmdb database. This repository can act as a submodule of other projects intended to use the ptmdb

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bacteria2tfbs

Scripts and utilities to search TFBS in bacterial genomes

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ecoref

An Escherichia coli genetic reference panel

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kinase-activity-net

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mutfunc-webserver

Bug tracker for the mutfunc webserver

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evocellnet.github.io

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sysbio_teaching

Repository for the ETHZ Systems Biology course (FS2023)

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