evanseitz

Evan Seitz's starred repositories

clipnet

A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution

Language:PythonMIT700

zenodo-upload

upload big files to Zenodo using cURL, jq and bash

Language:ShellMIT20900

DeepExplain

A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability. DeepExplain also includes support for Shapley Values sampling. (ICLR 2018)

Language:PythonMIT72000

captum

Model interpretability and understanding for PyTorch

Language:PythonBSD-3-Clause472600

Attribution-Evaluation

Code for the paper: Towards Better Understanding Attribution Methods. CVPR 2022.

Language:PythonNOASSERTION1400

mavenn

MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect

Language:Jupyter NotebookMIT2300

beyond_ManifoldEM

Geometric relationships between manifold embeddings of a continuum of 3D molecular structures and their 2D projections

Language:PythonGPL-3.0200

ManifoldEM_ESPER

Software implementation for paper Heuristic Analysis of Manifolds from Simulated Cryo-EM Ensemble Data

Language:PythonGPL-3.0600

PyQt4_video_player

video player for PyQt4

Language:PythonGPL-3.0100

POLARIS

Path of least action analysis on energy landscapes

Language:PythonGPL-3.0500

cryoEM_synthetic_generation

Simulation of cryo-EM ensemble data from atomic models of molecules exhibiting continuous motions

Language:PythonGPL-3.01200