Emir Turkes's repositories
habib-2017-snRNAseq
Analysis of Habib 2017 snRNAseq
lake-2016-snRNAseq
Analysis of Lake 2016 snRNAseq
autossh-autosetup
Script for setting up reverse AutoSSH
bag3-co-ip
Analysis of BAG3 Co-IP MS data
bag3-pathway-analysis
Pathway analysis of the BAG3 protein
iss-microglia
Repo for in-situ sequencing (ISS) analysis of microglia
KeepToText
Convert a Google Takeout zip file containing Google Keep notes to a directory of text files, suitable for import into systems such as Evernote
oxtr-ko-201703
Master thesis data on oxytocin receptor knockout mice
pivot-docker
Community-developed Docker container for the PIVOT transcriptomics platform
pymice-analyzer
A PyMICE project creator and pipeline manipulator
pymice-modules
Repository for PyMICE Intellicage paradigms, statistical methods, and display methods
pymice-notebook
Docker Jupyter Notebook for PyMICE Intellicage analysis
pymice-server
A web UI for server-based Intellicage analysis using PyMICE
pymice-tools
A meta repository for PyMICE submodules. This is the PyPI/Conda installable.
R-docker-minimal
Docker image with a minimal configuration and packages
R-template
A template for starting R projects
R-tutorial
A simple tutorial for navigating R
RNAseq-preprocess
Repository for general preprocessing of RNAseq data
taub-beamer-template
A beamer template for the CUMC Taub Institute, adapted from http://www.rax.cl/other-stuff
transcriptomics-benchmarks
A benchmarking of the many tools in the transcriptomics ecosystem
website-eturkes
My personal website, adapted from Divio's django CMS