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Eric Talevich's starred repositories

google-research

Google Research

Language:Jupyter NotebookApache-2.033648 748 1227

ruff

An extremely fast Python linter and code formatter, written in Rust.

Language:RustMIT29982 77 4966

rye

a Hassle-Free Python Experience

Language:RustMIT13182 60 617

pyright

Static Type Checker for Python

Language:PythonNOASSERTION12887 125 5981

pyro

Deep universal probabilistic programming with Python and PyTorch

Language:PythonApache-2.08477 201 1073

WeasyPrint

The awesome document factory

Language:PythonBSD-3-Clause6976 133 1833

syft

CLI tool and library for generating a Software Bill of Materials from container images and filesystems

Language:GoApache-2.05907 59 1077

pre-commit-hooks

Some out-of-the-box hooks for pre-commit

Language:PythonMIT5139 46 484

anthropic-cookbook

A collection of notebooks/recipes showcasing some fun and effective ways of using Claude.

Language:Jupyter NotebookMIT4091 132 26

lance

Modern columnar data format for ML and LLMs implemented in Rust. Convert from parquet in 2 lines of code for 100x faster random access, vector index, and data versioning. Compatible with Pandas, DuckDB, Polars, Pyarrow, with more integrations coming..

Language:RustApache-2.03709 40 896

chartbrew

Open-source web platform used to create live reporting dashboards from APIs, MongoDB, Firestore, MySQL, PostgreSQL, and more 📈📊

Language:JavaScriptMIT2557 27 140

positron

Positron, a next-generation data science IDE

Language:TypeScriptNOASSERTION2215 22 2502

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Language:CNOASSERTION1747 86 1106

openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

Language:C++1456 82 2711

practical_cheminformatics_tutorials

Practical Cheminformatics Tutorials

Language:Jupyter NotebookMIT764 44 10

rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

Language:Jupyter NotebookApache-2.0316 17 33

seqviz

a JavaScript DNA, RNA, and protein sequence viewer

Language:TypeScriptMIT233 12 134

ncls

The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.

Language:CBSD-3-Clause208 6 32

pbmm2

A minimap2 frontend for PacBio native data formats

Language:PerlBSD-3-Clause-Clear167 200

tox-conda

Make tox cooperate with conda envs

Language:PythonMIT152 7 73

cloud-pipeline

Cloud agnostic genomics analysis, scientific computation and storage platform

Language:JavaApache-2.0144 22 1394

ccsmeth

Detecting DNA methylation from PacBio CCS reads

Language:PythonBSD-3-Clause-Clear68 1 50

amazon-omics-tutorials

Language:PythonApache-2.058 10 19

pytometry

Flow & mass cytometry analytics.

Language:PythonApache-2.041 4 27

tg-oss

Teselagen Open Source modules

Language:JavaScriptMIT37 12 51

HiFiCNV

Copy number variant caller and depth visualization utility for PacBio HiFi reads

Language:ShellBSD-3-Clause-Clear34 5 25

SequelTools

new repo

Language:ShellGPL-3.026 6 20

miniwdl-omics-run

WDL launcher for AWS HealthOmics

Language:PythonMIT7 20

laava

LAAVA: Long-read AAV Analysis

Language:PythonMIT6 2 34

miniwdl-aws-terraform

Example infrastructure configuration for miniwdl-aws

Language:HCLMIT3 20