etaijacob

Etai Jacob's repositories

CMA

An R package for correlated mutation analysis using both codon and amino acid levels

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ACPSICOV

Protein Sparse Inverse COVariance analysis program for nucleotide and amino acid sequences

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docker-rserve

Dockerfile for build a Rserve

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MAPDB

An R package for mapping Pfam multiple sequence alignment (MSA in sth format) or Uniprot (MSA in fasta format) to PDB residue coordinates.

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TOYFOLD

A Software suite to perform enumeration and simulations of a simplified model (i.e. toy model) of protein structure and folding process

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AA2CODON

A Python package for generating codon MSA file from amino acid MSA file

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BioseqUtils

An R package containing various biological sequence analysis tools

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This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/dupRadar.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=dupRadar.

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etaijacob.github.io

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MiscInR

This repository contains some code that might clear up some issues in R

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old_website

Personal website

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scde

Example of docker with R, scde and DESeq2

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single_cell_analysis

Introduction to single-cell RNA-Seq analysis workshop

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www_personal

Personal website

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