eskutkaan

Kaan Ihsan Eskut's repositories

Open source code for AlphaFold.

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Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

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Automatic and optimised consensus clustering of one or more heterogeneous datasets

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Copy number variant detection from targeted DNA sequencing

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A genome completeness evaluation tool based on miniprot

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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

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Config files for my GitHub profile.

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a blog hosted on GitHub Pages

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Official code repository for GATK versions 4 and up

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Lightning-fast and Powerful Code Editor written in Rust

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A versatile pairwise aligner for genomic and spliced nucleotide sequences

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a short snakemake workflow to analyze bulk RNAseq data

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Tools (written in C using htslib) for manipulating next-generation sequencing data

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The TRate program computes "rate" of each transcript according to given coverage file.

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a work-in-progress k-mer counter written in Rust

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