Erik Sjölund's repositories
OpenSeadragonPaperjsOverlay
paperjs canvas overlay for openseadragon
slurm-container-cluster
Container-based Slurm cluster with support for running on multiple ssh-accessible computers. Currently it is based on podman, systemd, norouter and sshocker (sshfs).
build-podman
Build Podman with Github actions
PC-build-128Gb-X570-AMD-Ryzen-9-3900x
Completed PC build with 128Gb RAM, AMD Ryzen 9 3900x CPU and X570 motherboard
create-fcos-iso-with-ssh-key
Bash script to create a Fedora CoreOS live iso customized with your SSH public key. Docker or Podman is used in the script.
find-the-nearest-runestone-in-sweden
Step-by-step instructions of how to find runestones in Sweden with https://app.raa.se/open/fornsok/ (A database from the Swedish National Heritage Board, Riksantikvarieämbetet)
abi2xml
abi2xml is a command-line tool to convert an ABIF file to an XML file. ABIF files (also called ABI trace files) contain DNA sequence data and are e.g. produced by ABI PRISM TM 377 DNA sequencers. This software is written in C++ and released under the GPL license version 2.
writing-more-secure-perl-cgi-scripts
Tutorial of how to write more secure Perl CGI scripts
awesome-compose
Awesome Docker Compose samples
compress-pfam-data-benchmark-zstd
Minimal benchmark test to compare zstd (zstandard) compression with gzip for the datafile Pfam-A.full.gz
container-cxx-compiler-debian-experimental
Dockerfiles for C++ compilers from the repository Debian experimental (gcc and clang)
coreos-installer
Installer for CoreOS disk images
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
kubernetes
Production-Grade Container Scheduling and Management
libfuse
The reference implementation of the Linux FUSE (Filesystem in Userspace) interface
microSALT
Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
nfs-mount-in-userns
Experiment with NFS mount in a user namespace
node-systemd
Support for running node.js as a socket-activated service under systemd
reproduce-podman-issue-9389-in-github-actions-workflow
A GitHub Actions workflow demo of the Podman issue 9389
run-fcct-with-github-actions
Run fcct in Github actions (as a workflow) to generate an Ignition file
scout
VCF visualization interface
simd-diagonal-load-json-demo
Command-line tool to demonstrate how to use the C++ library simd-diagonal-load
trailblazer
Keep track of and manage analyses