Link to Documentation: https://opendihu.readthedocs.io/en/latest/
Overview
OpenDiHu is a software framework to solve 1D, 2D, and 3D multi-physics problems in parallel with the Finite Element Method. It is used in the domain of skeletal muscle simulations: Electrophysiology, contraction, neuro-chemo-electro-mechanics. Design goals are usability, performance and extensibility.
The software is developed at SGS and IANS at the University of Stuttgart.
Installation
Refer to the documentation for detailed installation instructions.
However, if you usually skip instructions, do the following:
git clone https://github.com/maierbn/opendihu.git && cd opendihu && make
If there are error messages, have a look at the log file config.log
.
Literature / How to cite
Currently, the following literature written by the authors is available.
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(Open-access) Benjamin's PhD thesis. This is the most comprehensive literature about OpenDiHu and contains details of the implemented models as well as some documentation about the software architecture.
Maier, B. (2021). Scalable Biophysical Simulations of the Neuromuscular System.
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(Open-access) Journal paper about mesh generation and simulations:
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Article about computational performance, in proceedings of the HLRS:
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First conference paper: