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Etienne RIFA's repositories

ranomaly

AmplicoN wOrkflow for Microbial community AnaLYsis

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crossvalid_tax

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DAIRYdb

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datamods

Shiny modules to import data into an application or addin

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ExploreMetabar

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fill_tax

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GraphstatsR

A shiny app allowing users to generate advanced interactive graphics and statistical tests. This repo is a mirror of https://forgemia.inra.fr/etienne.rifa/graphstats/

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markdown-mark

Use this mark to identify Markdown.

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metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

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microbiomeSeq

An R package for microbial community analysis in an environmental context

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MINTIA

Metagenomic INsertT BIoinformatic Annotation

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otu2barplotQ2

Create interactive Qiime2 barplot with otu table and metadata table as input.

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OtuTable-prepro

Preprocessing otu table

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pairwiseAdonis

Pairwise multilevel comparison using adonis

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psadd

PSADD -- PhyloSeq ADDitions

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ranacapa

R package for downstream analysis for anacapa eDNA pipeline

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SARTools

Statistical Analysis of RNA-Seq Tools

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testsite

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