ericmjl

Network-Analysis-Made-Simple

An introduction to network analysis and applied graph theory using Python and NetworkX

llamabot

Pythonic class-based interface to LLMs

protein-interaction-network

Computes a molecular graph for protein structures.

minimal-flask-example

The simplest complex example that I can think of to show main Flask app concepts.

pyds-cli

Helping you manage your data science projects sanely.

resume

Building a resume using nothing but YAML files and Python. A prototype.

ericmjl.github.io

For my actual source repo, please go to https://github.com/ericmjl/website

website

Eric Ma's Personal Website

foam

A personal knowledge management and sharing system for VSCode

worship-manager

Open source software for worship coordinators and leaders.

awesome-jax

JAX - A curated list of resources https://github.com/google/jax

questions-for-employers

how-llms-can-accelerate-data-science

My talk at BioIT World 2024.

awesome-mlops

A curated list of references for MLOps

litellm

Call all LLM APIs using the OpenAI format. Use Bedrock, Azure, OpenAI, Cohere, Anthropic, Ollama, Sagemaker, HuggingFace, Replicate (100+ LLMs)

llama_index

LlamaIndex (GPT Index) is a data framework for your LLM applications

pydna

Double stranded DNA & simulation of homologous recombination, Gibson assembly, cut&paste cloning in Python and Jupyter notebooks

pytest-regressions

Pytest plugin for regression testing: https://pytest-regressions.readthedocs.io

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

balena-sound

Build a Bluetooth audio streamer for any audio device using a Raspberry Pi

cachier

Persistent, stale-free, local and cross-machine caching for Python functions.

data-science-in-biotech-research

Hands-off tutorial at ODSC East 2024.

DendroPy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

interrogate

Explain yourself! Interrogate a codebase for docstring coverage.

langchain

⚡ Building applications with LLMs through composability ⚡

openfold

Trainable PyTorch reproduction of AlphaFold 2

pyscript

pytest-datadir

pytest plugin for manipulating test data directories and files

python-hacking

In which I try out all sorts of Python hacks.

tiny-essay-editor

simple markdown editor w inline comments, on latest automerge stack