erganzi90 / spsam

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spSAM: 10X visium spot Split Align Map

spsam

Usage and Tutorials

Please refer to the PDF for detailed tutorial or download HTML for interactive figures. Download demo data(34Mb) for test.

Installation

If you do not have conda please install Miniconda first.

conda create -n spsam_env python=3.9.17
conda activate spsam_env
pip install spsam

jupyter lab
[tutorial]

FAQ

See https://github.com/erganzi90/spsam/issues

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