Giters
Eray (eray-sahin)

eray-sahin

Geek Repo

6

followers

21

following

31

stars

Github PK Tool:Github PK Tool

Eray's starred repositories

scfa_predictions

Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut

Language:Jupyter NotebookStargazers:9Issues:0Issues:0

functional_enrichment_analysis

A DIY guide to gene ontology, pathway, and gene set enrichment analysis

Language:Jupyter NotebookLicense:MITStargazers:12Issues:0Issues:0

gcp-for-bioinformatics

GCP for Bioinformatics Researchers

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:231Issues:0Issues:0

isb_course_2023

Materials and presentation for the 2023 ISB Microbiome course.

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:19Issues:0Issues:0

cosmosid-cli

Command line client and Python libraries for CosmosID API

Language:PythonLicense:MITStargazers:11Issues:0Issues:0

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Language:RLicense:MITStargazers:6250Issues:0Issues:0

ggkegg

Analyzing and visualizing KEGG information using the grammar of graphics

Language:RLicense:MITStargazers:204Issues:0Issues:0

mltoolkit

Language:RLicense:MITStargazers:1Issues:0Issues:0

Python

All Algorithms implemented in Python

Language:PythonLicense:MITStargazers:183504Issues:0Issues:0

SurfaceWaterMicrobiome

Supplemental R script for the project publication

Language:RStargazers:1Issues:0Issues:0

MetaPathPredict

A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.

Language:PythonStargazers:15Issues:0Issues:0

SNFtool

Similarity Network Fusion

Language:RStargazers:29Issues:0Issues:0

cols4all

Colors for all (R package)

Language:RStargazers:308Issues:0Issues:0

EHI_bioinformatics

Bioinformatics pipeline to process EHI data

Language:PythonStargazers:4Issues:0Issues:0

metabolome-lipidome-MSDIAL

Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of metabolites) in R.

Language:RLicense:MITStargazers:13Issues:0Issues:0

metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December

Language:HTMLLicense:GPL-3.0Stargazers:51Issues:0Issues:0

dfast_core

DDBJ Fast Annotation and Submission Tool

Language:PythonStargazers:76Issues:0Issues:0

training-collection

Collection of bioinformatics training materials

Language:PythonLicense:NOASSERTIONStargazers:955Issues:0Issues:0

DAMMA

Language:RStargazers:2Issues:0Issues:0

ncbitax2lin

🐞 Convert NCBI taxonomy dump into lineages

Language:PythonLicense:MITStargazers:137Issues:0Issues:0

modelsummary

Beautiful and customizable model summaries in R.

Language:HTMLLicense:NOASSERTIONStargazers:903Issues:0Issues:0

tiwih

simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.

Language:NimLicense:MITStargazers:44Issues:0Issues:0

SprayNPray

Rapid and simple taxonomic profiling of genome and metagenome contigs

Language:PythonLicense:GPL-3.0Stargazers:27Issues:0Issues:0

multiROC

Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications

Language:RLicense:GPL-3.0Stargazers:30Issues:0Issues:0

AlzheimersMP

Language:Jupyter NotebookStargazers:1Issues:0Issues:0

phd2020

PhD Course 2020 Systems Biology of Human Metabolism and Gut Microbiome (3 ECTS)

Language:Jupyter NotebookStargazers:8Issues:0Issues:0

awesome-nanopore

A curated list of awesome nanopore analysis tools.

License:MITStargazers:226Issues:0Issues:0

MUFFIN

hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis

Language:NextflowLicense:GPL-3.0Stargazers:65Issues:0Issues:0

BiomeNED

BiomeNED main code

Language:PythonStargazers:10Issues:0Issues:0

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

Language:HTMLStargazers:1857Issues:0Issues:0