Epiforecasts's repositories
covid19.sgene.utla.rt
Local area reproduction numbers and S-gene target failure.
covid-global
This is a submodule of epiforecasts/covid - see that repo for information. See https://github.com/epiforecasts/covid-global-archive for an archive
covid19.slovakia.mass.testing
Data and code accompanying the preprint "The effectiveness of population-wide screening in reducing SARS-CoV-2 infection prevalence in Slovakia"
covidforecastanalysis
Code for evaluating COVID-19 forecasts
eval-omicron-for-case-forecasting
Joint forecasting of case counts and sequence (or SGTF) data across countries reporting data to GISAID
jekyll-epiforecasts-website
central website
rt-comparison-uk-public
Evaluating the use of the reproduction number as an epidemiological tool, using spatio-temporal trends of the Covid-19 outbreak in England.
covid-rt-brazil-subregional
Subregional estimates of Rt for Covid-19 in Brazil
covid19_immunity
Covid-19 immunity estimates
crowd-evaluation
Evaluation for our crowd forecasts
evaluate-delta-for-forecasting
Evaluating the impact of modelling strain dynamics on short-term COVID-19 forecast performance
GM-PL-forecast-evaluation
(Unofficial) evaluation of the forecasts submitted to the German Forecast Hub
rt-breakpoints
Estimate Rt using breakpoints with EpiNow2
covid-regional
This a submodule of epiforecasts/covid - see that repo for further information. See here for an archive: https://github.com/epiforecasts/covid-regional-archive
covid-regional-2
This a submodule of epiforecasts/covid - see that repo for further information.
forecasthubutils
What the Package Does (Title Case)
rt.validation
Validation of time-varying reproduction number estimates.
SARS-CoV-2-VL-paper
Data and files from the May 25, 2021 SARS-CoV-2 viral load and infectiousness paper