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Elise Parey's starred repositories

datatable

A Python package for manipulating 2-dimensional tabular data structures

Language:C++MPL-2.0180400

qnorm

Fast-ish (and correct!) quantile normalization in Python.

Language:PythonMIT2700

macro_time_calibration

Phylogenomic analyses to estimate the divergence time between anguilla and conger

Language:Ruby100

Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.

Language:PythonMIT4100

goatools

Python library to handle Gene Ontology (GO) terms

Language:PythonBSD-2-Clause75900

HACK

Hierarchical approach to Stabilised Independent Component Analysis

Language:Jupyter NotebookGPL-3.0700

Syn-MRL

Synteny matrix representation with maximum likelihood pipeline

Language:Perl1300

Phylorgs

Language:PythonNOASSERTION400

Agora

Algorithm For Gene Order Reconstruction in Ancestors

Language:PythonNOASSERTION6900

FINSURF

FINSURF is a tool designed to analyse lists of sequences variants in the human genome.

Language:PythonNOASSERTION1100

intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

Language:PythonNOASSERTION13200

mamba

The Fast Cross-Platform Package Manager

Language:C++BSD-3-Clause668900

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