Felipe Engelberger's repositories
ACPI
Adaptive Conformal Prediction Intervals (ACPI) is a Python package that enhances the Predictive Intervals provided by the split conformal approach by employing a weighting strategy.
AF-CBA-pipeline
3 stage filtering pipeline for finding binding epitopes
ColabDesign
Making Protein Design accessible to all via Google Colab!
alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
avoidome-analysis
A repository for downloading and analyzing the available Avoidome structures
BasisLib
Your favorite basis functions for equivariant models in one place. Code borrowed from e3x
DeProt
Code for DeProt. A protein language model with quantizied structure and disentangled attention
DynamicBind
repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
lecture2
lecture 2 - 2024-01-20
ligand_mpnn_jax
an ongoing attempt to port the pytorch ligand MPNN code to jax
LigandDiff
LigandDiff
ludwig
Low-code framework for building custom LLMs, neural networks, and other AI models
penzai
A JAX research toolkit for building, editing, and visualizing neural networks.
PPIRef
Working with protein-protein interactions in 3D
repeng
A library for making RepE control vectors
rf_diffusion_all_atom
Public RFDiffusionAA repo
RFdiffusion
Code for running RFdiffusion