Felipe Engelberger's repositories
ACPI
Adaptive Conformal Prediction Intervals (ACPI) is a Python package that enhances the Predictive Intervals provided by the split conformal approach by employing a weighting strategy.
alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
avoidome-analysis
A repository for downloading and analyzing the available Avoidome structures
BasisLib
Your favorite basis functions for equivariant models in one place. Code borrowed from e3x
chroma
A generative model for programmable protein design
concurrent_agent_executor
An concurrent runtime for tool-enhanced language agents
DeProt
Code for DeProt. A protein language model with quantizied structure and disentangled attention
InfGCN-pytorch
Official implementation of the NeurIPS 23 spotlight paper of ♾️InfGCN♾️.
LieNeurons
Adjoint-Equivariant Neural Network for Semi-Simple Lie Algebras
ligand_mpnn_jax
an ongoing attempt to port the pytorch ligand MPNN code to jax
live-typescript-monorepo
Strategies for live-updating TypeScript types in monorepos
logit-gfn
Official Code for Learning to Scale Logits for Temperature-conditional GFlowNets (ICML 2024)
ludwig
Low-code framework for building custom LLMs, neural networks, and other AI models
masif-neosurf
MaSIF-neosurf: surface-based protein design for ternary complexes.
penzai
A JAX research toolkit for building, editing, and visualizing neural networks.
PPIRef
Working with protein-protein interactions in 3D
proteinmpnn_ddg
Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
pyDDM
Code to build and analyze distance difference matrices (DDMs) to compare protein conformations. Also contains all code associated with "They all rock: A systematic comparison of conformational movements in LeuT-fold transporters"