endrebak.ada's repositories
featurefetch
Fetch and sort regions from gtfs.
bing
bing: Biocore-NTNU command line gene query tool using mygene.info
cookiecutter
A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.
create-trackhub
Create a UCSC trackhub from a sample-sheet and config file
deepTools
Tools to process and analyze deep sequencing data.
ebs_wrappers
Trying out snakemake wrappers
effect-alleles
Find effect alleles for rs-ids from the GWAS Catalogue
gwas_catalogue
Get a bed of Chrom, Pos, Rsids and PVal from the GWAS catalogue and liftover to hg19
intervaltree
a minimal C++ interval tree implementation
Lene-RNA-Seq-Simes
Confirm Lene's results by alternative method.
md2pdf
Markdown to PDF conversion tool
pedigree_analysis_course
Code for the Norbis pedigree analysis course
programming_clojure
Various code-snippets from Programming Clojure 3. ed.
r-spatest-feedstock
A conda-smithy repository for r-spatest.
Rle-python
Run-length encoding data structure
RNA-Seq-pipeline
Our Snakemake RNA-Seq pipeline
rna_seq_expression
RNA Seq expression pipeline to create deeptools beds
rseg_debug
Trying to debug/find out how to run rseg (segfaults ahoy)
rust-ranges
Learning Rust by implementing S4Vectors/IRanges
singularity_recipes
Recipes for singularity, mostly for use with Snakemake
test_pyrle
Minimum reproducible example problem mac OS
yaml-config-updater
Script to update yaml files based on template