empyriumz

awesome-chatgpt-prompts

This repo includes ChatGPT prompt curation to use ChatGPT better.

alt-tab-macos

Windows alt-tab on macOS

nitter

Alternative Twitter front-end

hydra

Hydra is a framework for elegantly configuring complex applications

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

chain-of-thought-hub

Benchmarking large language models' complex reasoning ability with chain-of-thought prompting

ColabFold

Making Protein folding accessible to all!

papers_for_protein_design_using_DL

List of papers about Proteins Design using Deep Learning

scikit-learn-intelex

Intel(R) Extension for Scikit-learn is a seamless way to speed up your Scikit-learn application

scikit-survival

Survival analysis built on top of scikit-learn

rtdl

Research on Tabular Deep Learning: Papers & Packages

FastFold

Optimizing AlphaFold Training and Inference on GPU Clusters

facet

Human-explainable AI.

pysurvival

Open source package for Survival Analysis modeling

auton-survival

Auton Survival - an open source package for Regression, Counterfactual Estimation, Evaluation and Phenotyping with Censored Time-to-Events

cryodrgn

Neural networks for cryo-EM reconstruction

tensorcircuit

Tensor network based quantum software framework for the NISQ era

NeuralPLexer

NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model

awesome-switching

switching from the *pple ecosystem to Windows / Linux / Android or BSD

gemmi

macromolecular crystallography library and utilities

chroma-pytorch

Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch

shapr

Explaining the output of machine learning models with more accurately estimated Shapley values

survshap

SurvSHAP(t): Time-dependent explanations of machine learning survival models

deepEMhancer

Deep learning for cryo-EM maps post-processing

SiamDiff

Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)

cryo2struct

The programs for preprocessing cryo-EM density maps for machine learning

RL_for_optimization_of_VQE_circuit_architectures

CryoFEM

Deep learning based cryoEM density map feature enhancement

chonker

A lightweight package for chunking iterables