Étienne Mollier's repositories
andi
♥ Efficient Estimation of Evolutionary Distances
augur
Pipeline components for real-time phylodynamic analysis
bamtools
C++ API & command-line toolkit for working with BAM data
bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
brian2
Brian is a free, open source simulator for spiking neural networks.
cuteSV
Long read based human genomic structural variation detection with cuteSV
DALIGNER
Find all significant local alignments between reads
DAZZ_DB
The Dazzler Data Base
dcmstack
DICOM to Nifti conversion with meta data preservation
dipy
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
nitime
Timeseries analysis for neuroscience data
nixpy
Python library for NIX
pairix
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
parsl
Parsl - a Python parallel scripting library
perl-Data-TableReader
Extract records from "dirty" tabular data sources
perl-math-gsl
Building Math::GSL with GitHub Actions
pirs
profile basd Illumina pair-end Reads Simulator
py2bit
A python library for accessing 2bit files
pyBigWig
A python extension for quick access to bigWig and bigBed files
q2-sample-classifier
QIIME 2 plugin for machine learning prediction of sample data.
Scoary
Pan-genome wide association studies
seqcluster
small RNA analysis from NGS data
seqmagick
An imagemagick-like frontend to Biopython SeqIO
shasta
De novo assembly from Oxford Nanopore reads.
TFBS
TFBS perl module
thesias
THESIAS: Testing Haplotype Effects In Association Studies
trx-python
Python implementation of the TRX file format
vsearch
Versatile open-source tool for microbiome analysis
zonemaster-cli
The Zonemaster CLI - part of the Zonemaster project
zonemaster-engine
The Zonemaster Engine - part of the Zonemaster project