Emma Rogge's repositories
CellProfiler
An open-source application for biological image analysis
distribution
Everything needed to build CellProfiler for your favorite environment.
reward-complexity
code for reproducing analyses in "Origin of perseveration in the trade-off between reward and complexity"
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
conda-devenv
A conda tool to work with multiple projects in development mode.
configs
Config files used to define parameters specific to compute environments at different Institutions
core
Core classes and components used by CellProfiler - forked for development of GCS support
fingerprint
Document fingerprint generator
github-project-csv-to-sheets
Import a CSV in a GitHub repo to Google Sheets
growth-curves
Statistical models of children's growth curves that predict which kids are at risk of obesity.
JointSLU-DataSet
Well-known datasets for JointSLU.
lab6
Harvard, CS51, Lab 6
MARS
MARS: improving Multiple circular sequence Alignment using Refined Sequences
Mash
Fast genome and metagenome distance estimation using MinHash
notebooks
colab notebooks
pavlovian-instrumental-arbitration
Experiment code for Pavlovian-Instrumental arbitration study
python-bioformats
Read and write life sciences file formats
sourmash
Compute and compare MinHash signatures for DNA data sets.
steepittogether
A website for tea lovers.
steepittogether_cs50
A local version of our app because CS50 won't just go to our website
terra-dockstore-test-workflow
A basic workflow to test whether a Dockstore workflow can be shared with members of a Terra Group.
terra-example-notebooks
Example notebooks for use in data analysis.
test-datasets
Test data to be used for automated testing with the nf-core pipelines