emmaewade / Worm-Tutorials

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Worm Tutorials

WormSizer: https://pool-almanac-70e.notion.site/WormSizer-Tutorial-C-Elegans-Quantification-and-Measurement-with-Epson-V800-Scans-34191ecf02f241d5bc7c3e90a17b0c1a

  • Counts and measures length, volume, etc.
  • Can be used on a single image

wrMTrck: https://pool-almanac-70e.notion.site/Wrmtrck-Tutorial-C-Elegan-Swimming-Trashing-Body-Bends-Quantification-f39630287bcb43fba8b682c01ff892fd

  • Counts and measures movement
  • Must have more than one image
  • Didn't 100% figure out measuring the paths, probably better with 1000s of images or video

Tierpsy Tracker: https://pool-almanac-70e.notion.site/Tierpsy-Tracker-78140b7adfb440e5a281a5a2cf1f5e33?pvs=4

  • Requires video
  • Has a very involved GUI
  • Outputs movement statistics for single worm or whole plate

Citations:

Other helpful links:

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