DammitJim's repositories
ApPhenotypeEvaluation
Stanford docker, site specific BQ and policy patches. This study uses a probabilistic reference standard validation method to rapidly estimate the measurement errors of 5 acute pancreatitis phenotype definitions. It also computes comprehensive, population-level characteristics of the cohorts returned by the 5 phenotype algorithms.
CohortExplorer
An R package with a Shiny viewer to explore profiles of patients in a cohort
Covid19SubjectsAesiIncidenceRate
Extending on our previous work by Li et al. in understanding the incidence rates of adverse events of special interest (AESI) for COVID-19, this work will look at the rates of these AESIs in patients who had COVDI-19 disease.
DataQualityDashboard
A tool to help improve data quality standards in observational data science.
OHDSI_prone
Repository for files and code related to the OHDSI Prone Incident study and deployment at stanford
PheValuator
Stanford debug branch. An R package for evaluating phenotype algorithms.
StudyProtocolSandbox
This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.