Emily Schwenger's repositories
all_things_schwemz
My website
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MoCaSeq
Analysis pipelines for cancer genome sequencing in mice.
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myrepo
Testing my setup
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p53_fitness_tradeoff
Repository for the paper: "A model of mutant p53 fitness defines fundamental trade-offs between oncogenic potential and immunogenicity of tumor-driver mutations".
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pyclone
Probabilistic model for inferring clonal population structure from deep NGS sequencing.
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PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
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r-pkgs
Building R packages
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scanpy_in_r
Scanpy scRNA-seq analysis
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schwebsite
host rmd website on github
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sciclone
An R package for inferring the subclonal architecture of tumors
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scrna_mutations
Supplementary data for Petti, et al 2019 scRNA mutation publication
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seurat
R toolkit for single cell genomics
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