emilydolson

python-red-black-trees

Red-black tree implementation in Python

force-cover

Modify C++ test coverage reports to show uninstantiated templates

phylotrackpy

Python phylogeny tracker for in silico evolution experiments

alife-phylogeny-tutorial

CSE-830-SS-23

chemical-ecology

CSE-830-SS-22

Empirical

A library of tools for scientific software development, with emphasis on also being able to build web interfaces using Emscripten.

intermediate_cpp

lex-prob-is-np-hard

Code and materials for the paper "Calculating Lexicase Selection Probabilities is NP-Hard

phylogeny_wrangling_tools

Phylogeny wrangling scripts that I don't expect to be generally useful enough for the alife-data-standards repos

zotero-fibery-sync

Tool for syncing data between Zotero and Fibery

MABE2

Version 2 of the Modular Agent-Based Evolver

ALIFE-2024-DeNovoMutualism

avida-empirical

Experimental mash-up of Avida and Empirical - not recommended for general use

breathe

ReStructuredText and Sphinx bridge to Doxygen

CSE-431-FS-22

Course website for CSE 431: Algorithm Engineering Fall 2022

CSE-431-FS-23

CV

Mostly just testing out Overleaf GitHub integration, but this might turn out to be useful

DirectionalNK

ec_ecology_toolbox

General purpose tools for studying ecology in evolutionary computation

emilydolson

fishpoo

A study of gut microbial communities of Tanganyikan cichlids

lexicase-tradeoffs

A library for calculating the probabilities of selection under lexicase selection

lineage_viz_tool

A tool for visualizing lineages stored in a standards-compliant format

MFM

Movable Feast Machine C++ reference implementation and simulator

phylodiversity-metrics-in-EC-GPTP-2021

Measuring phylogenetic diversity metrics in evolutionary computation

phylogeny-informed-evaluation

SymbulationEmp

Symbulation is a software model of symbiosis built using Empirical

zotero-fibery-sync-api

A Fibery integration for synchronizing Zotero libraries to Fibery