Emily A. Aery Jones's repositories
bioRxiv_speaker_finder
Extract a list of authors who have published preprints containing a user-defined keyword
NMA2020-Seals-Evading-Hidden-States
Team project for Neuromatch Academy 2020 applying an HMM to data from Steinmetz et al, 2019 to elucidate latent states that help explain task performance
ecephys_spike_sorting
Modules for processing extracellular electrophysiology data from Neuropixels probes
AeryJones_2021
MATLAB and IGOR scripts used to generate "Hippocampal GABAergic Interneurons Bidirectionally Modulate Signatures of Internal and External Drive"
AP_histology
Histology processing
BMS-coding-bootcamp
The bioinformatics/coding bootcamp session taught to incoming UCSF Biomedical Sciences graduate students.
bombcell
Automated manual curation and cell classification of spike-sorted electrophysiology data in MATLAB. Fine-tuned for kilosorted Neuropixels data.
CellExplorer
CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.
chronic_NPX_mouse
Build files for chronic, recoverable Neuropixels implants in mice
emilyasterjones.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
fabric_masks
Simple fabric mask design for reducing viral spread
how-to-read-a-paper
A workshop to teach young scientists how to dissect a scientific paper
Jones_2019
MATLAB and Python scripts used to generate "Early Hippocampal Sharp-Wave Ripple Deficits Predict Later Learning and Memory Impairments in an Alzheimer’s Disease Mouse Model"
sglxarray
Utilities for loading SpikeGLX data in xarray format.
what-makes-us-human
A workshop on evolution for high school students
X_maze
Build files and scripts for an automated delayed (non)match to direction task