elswob

SCUBAT

Scaffolding Contigs Using Blat And Transcripts

JGI-Data-Week-2019

Constructing an academic knowledge graph and recommendation engine

neo4j-build-pipeline

A Snakemake and Docker based pipeline to create a Neo4j graph.

BASALT

Breast cAncer Subtype AnaLysis Tool

elastic-medline

Creating an elasticsearch instance of MEDLINE

SCRAN

Single Cell Rna-seq ANalysis

BioSentVec

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

dna-seq-varlociraptor

Variant detection with Delly and Freebayes, followed by statistical assessment with Varlociraptor

ga4gh-variant-sim

Simulations for benchmarking large-scale variant stores

glow

An open-source toolkit for large-scale genomic analysis

graph-view

Hh

Code for data processing and manuscript figures

medline

Create a basic local medline instance for high throughput informatics

pure-comp

rna-seq-pipe

Pipeline for processing RNA-Seq data

rnaseq-nf

A proof of concept of RNAseq pipeline

semrep

UoB-Orcid-2019

University of Bristol people and publications, extracted via Orcid and Pure in 2019