elowy01 / vcf_filtering

Filter a VCF to discard false positive variants

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Filtering a VCF

This repo contains the code and workflows used to identify the false positive variants in a VCF file.

For the identification of spurious variants I use a process based on supervised machine learning (ML) using a VCF with highly confident sites to train the model.

More documentation can be found here.

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Filter a VCF to discard false positive variants

License:Apache License 2.0


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