Elizabeth A.'s repositories
CleanAbricate
This code will clean up result files from an abricate test and get them ready to run as a BedTool test (it will transform the columns to three output columns: Chromosome, Start, End). Since it uses OS, it is only for a linux platform.
ebi-metagenomics-cwl
This repository contains the CWL description of the EBI Metagenomics pipeline
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
Spoon-Knife
This repo is for demonstration purposes only.
ToolJig
ToolJig: An app for building simplified Common Workflow Language tool descriptions
UPHL
The fun things we use and share at UPHL
WorkflowCombo
A python command line tool that helps users build a CWL workflow from many CWL command line tools. It is a companion tool to ToolJig.
WorkflowComboWebApp
This is the web application version of the WorkflowCombo command line tool.