elija feigl's repositories
cadnanoModifier
Script for modification of DNA Origami nano structure designed with caDNAno.
nanodesign
Python package for working with nucleic acid structural designs.
pytim-ext-networkHF
Extension to the PYTIM package for network analysis of hydrogen Fluoride
scaffold_orthogonality
simple script that analyses orthogonality of two DNA-Origami scaffold strands
cadnano2
Cadnano2
Foldingscreen_analysis
Analysis of TU Munich, Dietzlab - Standard Initial Folding Screen for DNA Origami
fre3DNA
lattice free 3D Dna Origami
gitignore
A collection of useful .gitignore templates
Illustrate
Biomolecular Illustration Tool
MATLAB_TOOLBOX
matlab toolbox
oxDNA
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
oxdna_analysis_tools
A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
pdb-cif
namd (enrgMD) PDB to chimera PDB converter for DNA origami nano structures
picasso
A collection of tools for painting super-resolution images
picasso_addon
Extensions to picasso python package.
pytim
a python package for the interfacial analysis of molecular simulations
SequenceCheck
check for optimal scaffold permutation for DNA Origami with special sequences
tacoxDNA
A collection of tools for DNA modelling
tiltedRSA
Random Sequential Adsorption of simple models for tilted molecules