elifesciences-publications / SeasonalEcosystem

Code and data for the article "Nutrient levels and trade-offs control diversity in a model seasonal ecosystem"

This code is associated with the paper from Erez et al., "Nutrient levels and trade-offs control diversity in a serial dilution ecosystem". eLife, 2020. http://doi.org/10.7554/eLife.57790

SeasonalEcosystem

Code and data for the article "Nutrient levels and trade-offs control diversity in a model seasonal ecosystem" arXiv: https://arxiv.org/abs/1902.09039

• Figure Generation - MATLAB code used to generate figures in the manuscript, including data

  • Data - Data files for figure generation
  • SeasonalEcosystemFitting - Data and code for fitting experimental data

• Code - MATLAB simlulation code used to produce data in the manuscript

  • GillespieBatchDilution - Stochastic simulations with Gillespie's algorithm
  • ode_dilution_code - Deterministic ODE simulations