Emily Humble's repositories
minION_species_ID
Species ID workflow with ONT amplicon data
SHO_analysis_2020
R scripts for running downstream analysis of resequencing data
SHO_roh_load_2022
🖥️🧬 Code for our manuscript "Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx"
manta_pop_gen_2022
🧬🌊Code for our manuscript "Comparative population genomics of manta rays has global implications for mangement"
SHO_reseq_2020
Read mapping and SNP calling run on UoE compute cluster
Agaz_85K_workflow_2018
🇦🇶 Workflow for processing data from the Agaz 90K SNP chip
ggpedigree
Draw nice pedigrees with ggplot2.
mobulid_phylo
Workflow for generating mobulid phylogenetics figures 📉🐟
primerdesignR
R package for designing primers
shiny_wildlifedetectR
🦏🐅🐘 Shiny app for running key wildlife forensic and population genetic analyses
SHO_reseq_2022
🖥️🧬 Code for our manuscript "Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx"
snp_filtering
Transcriptomic SNP filtering workflow
wildlifedetectR
🐘🐅🦏 R package for running key wildlife forensic and population genetic analyses
elhumble.github.io
🐋🐋🐋 Jekyll source code for my personal website
oryx_Y_chr
Analysis of oryx Y chromosomes on UoE compute cluster
rad_seals
scripts for rad analysis
rhina_popgen_2024
Scripts and data for population genomics analysis of bowmouth guitarfish
seal_demography_2018
📉💻 Workflow for reconstructing demographic history with SNPs
seal_rad_2018
🌊🇦🇶 RAD sequencing analysis workflow
shiny_snps
💫✏️Teaching resource for population genetics with SNPs
sri_lanka_map
🌏🐠🇱🇰 Sri Lanka fish markets