elhb

RawDataDistribution

Small script to quickly plot the spatial distribution of raw data from fastq files.

SEAseq

Script for analysis of SEAseq data

4Magnus

Some scripts to help magnus with his sequences

aliceflow

NextFlow framework to streamline the Genalice variant call pipeline

DBS_Analysis

fragplot

Python script to plot fragment sizes from two csv files (minIon and fragmentanalyzer).

scripts

Some scripts that I use now and then.

st_pipeline

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

taggd

Genetic barcode demultiplexing

TCR

A pipe for extracting TCRs from RNAseq data.

BestPracticesWorkshop

Repository for the workshop "Best practices on development"

borgstrom

python course ...

charter

fatemapping

file_tracker

Just for fun file tracker.

GA_16_14.10X_Chromium_evaluation

GA_16_14.10X_Chromium_evaluation

oskar_web

python_koans

Python Koans - Learn Python through TDD

seqcapPG

singlecell_genome_analysis

singleFatCellExomeAnalysis

slideshow-screensaver

Simple slideshow screensaver implemented with Python 2.7 and Pygame

st_analysis

A toolkit for visualisation and analysis of Spatial Transcriptomics datasets

st_spot_detector

A web tool to do automatic spots detections and positional adjustments for ST Datasets.

test_0

Description

try_git

TwoTaggingScripts

vcf_comparison_september_2016

wfaCleanup

Script for the Magnatrix 1200

WGAcomparison

Scripts for the WGA comparison project