Erik Wernersson's starred repositories
static-analysis
⚙️ A curated list of static analysis (SAST) tools and linters for all programming languages, config files, build tools, and more. The focus is on tools which improve code quality.
awesome-explorables
A curated list of awesome explorable explanations.
strobealign
Aligns short reads using dynamic seed size with strobemers
percolator
Semi-supervised learning for peptide identification from shotgun proteomics datasets
go-problems
Go Problem Collections from gogameguru.com
modified_mc33
Chernyaev’s Marching Cubes 33 is one of the first algorithms intended to preserve the topology of the trilinear interpolant. In this work, we address three issues with the Marching Cubes 33 algorithm, two of which are related to its original description and one that is related to its variant. In particular, we solve a problem with the core disambiguation procedure of Marching Cubes 33 that prevents the extraction of topologically correct isosurfaces for the ambiguous configuration 13.5. This work closes an existing gap in the topological correctness of Marching Cubes 33. Furthermore, we make our results reproducible, meaning that examples provided in this work can be easily explored and studied. Finally, as part of the philosophy of reproducibility, we provide a corrected version of the Marching Cubes 33 open-source implementation and access to datasets that can be used to verify the correctness of any available topologically correct isosurface extraction implementation that preserves the topology of the trilinear interpolant.
another-c-library
I've always thought it would be interesting to try and build the core algorithms. My hope is that others can benefit from this.
fastx-barber
Python package to trim and extract flags from FASTA and FASTQ files.
pyfish_tools
This repository contains various algorithms for analyzing image-based datasets, with a primary focus towards fluorescent in situ hybridization data.