Beast code in Giters

David Heller's repositories

svim

Structural Variant Identification Method using Long Reads

Language:PythonGPL-3.0150 6 71

svim-asm

Structural Variant Identification Method using Genome Assemblies

Language:PythonGPL-3.088 5 26

ssHMM

ssHMM is an RNA motif finder. It recovers sequence-structure motifs from RNA-binding protein data, such as CLIP-Seq data.

Language:PythonGPL-3.0500

assembly_sv_calling_evaluation

Language:JavaScript200

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell000

hal2vg

Convert HAL to VG

Language:C++MIT000

iGenVar

The official repository for the iGenVar project.

Language:C++BSD-3-Clause010

pac_bam_scan

Language:CMake020

pibeta

Language:C++000

real_sv_calling_evaluation

A snakemake pipeline for SV calling evaluation from long read sequencing

Language:PythonMIT000

seqan

SeqAn's official repository.

Language:C++NOASSERTION000

seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Language:C++NOASSERTION000

sv-benchmark

Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data

020

SViper

Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.

Language:C++000

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

Language:C++MIT000

vg

tools for working with genome variation graphs

Language:C++NOASSERTION020

wgasv

Scripts for studying SVs via graphs constructed from whole-genome-alignment

Language:Shell000

yeast_sv

Pipelines for SV genotyping using vgteam/vg on 12 yeast strains

Language:Python020