Beast code in Giters

Elad Noor's repositories

component-contribution

Standard reaction Gibbs energy estimation for biochemical reactions

Language:PythonNOASSERTION17 10 21

equilibrator

Language:JavaScriptMIT10 5 47

small-molecule-regulation

Language:HTMLMIT5 5 9

milo-lab

Automatically exported from code.google.com/p/milo-lab

Language:Python2 3 1

ms-tools

A collection of scripts for analyzing MS data

Language:PythonMIT2 30

equilibrator-api

A command-line version of eQuilibrator with minimal dependencies

Language:PythonMIT1 5 9

metabolic_modelling

Language:Python1 10

carbofix

A algorithm for automatic design of carbon fixation cycles

Language:PythonMIT020

Dynamic-labeling-cascade

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enzyme-cost

Kinetic modeling of pathway fluxes for estimating the specific cost in enzymes for sustaining a given flux

Language:Python04 2

enzyme-cost-minimization

Code for flux-specific enzyme cost calculations

Language:HTMLGPL-2.002 2

equilibrator-kbase

A KBase module for the Component Contribution method (AKA eQuilibrator)

Language:PythonMIT020

equilibrator3

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examples

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flux-enzyme-cost-minimization

Explore optimal metabolic states by screening of metabolic flux distributions and computing their enzyme cost via kinetic models

Language:PythonGPL-2.0020

flux-html-report

A python script that creates an HTML output file for FBA results

Language:HTMLMIT020

kvivo_max

Language:PythonMIT020

optlang

optlang - sympy based mathematical programming language

Language:PythonApache-2.0010

pkasolver

toolkit for prediction pKa values of small molecules via graph convolutional networks

Language:Jupyter NotebookMIT000

PMFA

Principal Metabolic Flux Mode Analysis

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pulsefeeding-analysis

MATLAB and Python code used for analysis and figure generation of E. coli pulsing/starvation project

Language:Jupyter Notebook020

replace-animals

A collaborative effort to investigate the advantage of replacing an animal-based diet with a plant-based one

Language:PythonMIT030

SBtab

SBtab - Table format for Systems Biology:

Language:PythonMIT010

sbtab-matlab

Matlab functions for SBtab format

Language:MATLABGPL-2.0020

sloppy

A cobrapy-based library that finds knockout and carbon-source combinations that enforce flux-biomass coupling

Language:PythonMIT020

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Language:PythonBSD-3-Clause010

stFBA

Implementation of the st-FBA algorithm, dependent on COBRApy

Language:TeXMIT010

sysbio2016

Proceedings and examples accompanying the Systems Biology Course in Innsbruck, February 2016

Language:Jupyter NotebookMIT020

sysbio2018

Scripts for the blackboard session in the SysBio 2018 conference in Innsbruck

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thermodynamic_feasbile_flux

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