Evan K. Irving-Pease's repositories
ctvt_paper
Source code from the paper: "The evolutionary history of dogs in the Americas" (2018) Science
mesoneo_paper
Source code from the paper: "The Selection Landscape and Genetic Legacy of Ancient Eurasians" (2022) bioRxiv
AncestralPaths
AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestries to segments of chromosomes the decribe the path back through a population history that segment has taken.
chicken_paper
Source code from the paper: "The biocultural origins and dispersal of domestic chickens" (2022) PNAS
rabbit_paper
Source code from the paper: "Rabbits and the Specious Origins of Domestication" (2018) TREE
2019-05-22-oxford
Oxford Software Carpentry Workshop
ccr5_paper
Source code from the paper: "Tracing the evolutionary path of the CCR5delta32 deletion via ancient and modern genomes" (2023) medRxiv
clues
Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
palm
Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
sulawesi_paper
Source code from the paper: "Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events" (2018) Proc. R. Soc. B
temporal-selection
Temporal selection exercises for PopGen21