ekimchi's repositories
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
commons
DataJoint schemas for neuroscience data
DeepLabCut
Markerless pose estimation of user-defined features with deep learning for all animals, including humans
DeepLabCut-Workshop-Materials
Workshop material for using DeepLabCut
dive-into-machine-learning
Dive into Machine Learning with Python Jupyter notebook and scikit-learn!
element-calcium-imaging
DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT
MotionMapper
Sample implementation of the MotionMapper behavioral analysis algorithms
OpBoxPhysCam
Physiology and Video acquisition using the OpBox System
PyDAQmx
Interface to National Instrument NIDAQmx driver
Suite2P
Tools for processing 2P recordings